• Best Practices in Writing Reproducible Code
  • 1 Welcome!
  • 2 Acknowledgements
  • 3 Preparation
    • 3.1 Data and/or Code
    • 3.2 Terminal
    • 3.3 Git
      • 3.3.1 Coding Platforms
      • 3.3.2 Install Git
      • 3.3.3 git config
      • 3.3.4 Set up SSH keys
      • 3.3.5 If SSH fails, HTTPS!
    • 3.4 Final Test!
  • 4 Introduction
    • 4.1 Schedule
      • 4.1.1 Pre-Workshop Installation Support
      • 4.1.2 Day 1
      • 4.1.3 Day 2
    • 4.2 Course Materials
      • 4.2.1 Slides
      • 4.2.2 Exercises
  • 5 Project Management
    • 5.1 Project setup
      • 5.1.1 Video
      • 5.1.2 Slides
      • 5.1.3 Exercises
    • 5.2 Version control
      • 5.2.1 Video
      • 5.2.2 Slides
      • 5.2.3 Exercise
    • 5.3 Publication & licensing
      • 5.3.1 Video
      • 5.3.2 Slides
      • 5.3.3 Exercise
  • 6 Code Quality
    • 6.1 Readability
      • 6.1.1 Video
      • 6.1.2 Slides
      • 6.1.3 Exercise
    • 6.2 Reusability
      • 6.2.1 Video
      • 6.2.2 Slides
      • 6.2.3 Exercise
    • 6.3 Robustness
      • 6.3.1 Video
      • 6.3.2 Slides
      • 6.3.3 Exercise
  • 7 Documentation
    • 7.1 Comments and docstrings
      • 7.1.1 Video
      • 7.1.2 Slides
      • 7.1.3 Exercise
    • 7.2 The README page
      • 7.2.1 Video
      • 7.2.2 Slides
      • 7.2.3 Exercise
  • 8 Accessibility & Reproducibility
    • 8.1 Dependencies
      • 8.1.1 Video
      • 8.1.2 Slides
      • 8.1.3 Exercise
    • 8.2 Binder
      • 8.2.1 Video
      • 8.2.2 Exercise (optional)
    • 8.3 Archiving
      • 8.3.1 Video
      • 8.3.2 Slides
      • 8.3.3 Exercise (optional)
  • 9 References
  • Published with bookdown

Best Practices in Writing Reproducible Code

4.2 Course Materials

4.2.1 Slides

  1. Introduction

  2. Project setup and version control

  3. Code quality

  4. Project documentation

  5. Accessibility & Reproducibility

4.2.2 Exercises

  1. Project setup & version control with git

  2. Code quality

  3. Project documentation

  4. Accessibility & reproducibility