CRISPRscape documentation

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Work in progress

How to use

To learn more about how to use the workflow, see the user manual

What it does

The workflow works as follows:

1. Download genome sequences

2. Screen for presence of CRISPR-Cas systems

3. Refine identified CRISPR arrays

4. Cluster identified CRISPR spacers

And comes with several additional functions

What it creates

For an overview of the output files that are created in the process, please consult output files

Why it works the way it does

We have summarised some of the rationale of why we have implemented this workflow the way it is in the developer notes