Rendering

Exercise

1. Render your Quarto document to docx using both:

• the quarto R package
• the Terminal

2. Adjust the YAML to include both html & docx and re-render the document.

OPTIONAL:

3. Render your Quarto document to pdf.

4. Try out the PLOS Journal Template.

• simply obtain the template and render it, no need to make changes to the content.

Frank, Mike, and Chris Hartgerink. 2017. “RMarkdown for Writing Reproducible Scientific Papers.” https://libscie.github.io/rmarkdown-workshop/handout.html.

Hartgerink, Chris. 2017. “Composing Reproducible Manuscripts Using R Markdown.” eLife. https://elifesciences.org/labs/cad57bcf/composing-reproducible-manuscripts-using-r-markdown; eLife Sciences Publications Limited.

Knuth, D. E. 1984. “Literate Programming.” The Computer Journal 27 (2): 97–111. https://doi.org/10.1093/comjnl/27.2.97.

Lasser, Jana. 2020. “Creating an Executable Paper Is a Journey Through Open Science.” Communications Physics 3 (1): 1–5. https://doi.org/10.1038/s42005-020-00403-4.

Mock, Tom. 2022a. “Get Started with Quarto - Getting Started with Quarto.” https://jthomasmock.github.io/quarto-2hr-webinar/.

———. 2022b. “Get Started with Quarto - Rstudio::conf 2022 Workshop.” https://rstudio-conf-2022.github.io/get-started-quarto/.

Quarto. n.d. “Quarto - Guide.” Quarto. https://quarto.org/docs/guide/. Accessed November 21, 2023.

The Turing Way Community. n.d. “Research Compendia.” The Turing Way. https://the-turing-way.netlify.app/reproducible-research/compendia. Accessed November 21, 2023.

Van Lissa, Caspar J., Andreas M. Brandmaier, Loek Brinkman, Anna-Lena Lamprecht, Aaron Peikert, Marijn E. Struiksma, and Barbara M. I. Vreede. 2021. “WORCS: A Workflow for Open Reproducible Code in Science.” Data Science 4 (1): 29–49. https://doi.org/10.3233/DS-210031.