The workshop materials consist of a project structure and dummy scripts that will be used during the session.
- Right-click on the following link and select Save Link As…: my-reproducible-manuscript.zip
- Save the zip file in a location that you can easily access. We recommend to not use the default download location of your browser.
- Extract the contents of the zipped file.
The materials should look like this:
my-reproducible-manuscript
├── data
│ └── data.csv
├── docs
├── results
└── scripts
│ ├── do_addition.py
│ ├── do_addition.R
│ ├── dummy.py
│ └── dummy.R
├── LICENSE.md
└── README.md
Frank, Mike, and Chris Hartgerink. 2017. “RMarkdown for Writing Reproducible Scientific Papers.” https://libscie.github.io/rmarkdown-workshop/handout.html.
Hartgerink, Chris. 2017. “Composing Reproducible Manuscripts Using R Markdown.” eLife. https://elifesciences.org/labs/cad57bcf/composing-reproducible-manuscripts-using-r-markdown; eLife Sciences Publications Limited.
Knuth, D. E. 1984.
“Literate Programming.” The Computer Journal 27 (2): 97–111.
https://doi.org/10.1093/comjnl/27.2.97.
Lasser, Jana. 2020.
“Creating an Executable Paper Is a Journey Through Open Science.” Communications Physics 3 (1): 1–5.
https://doi.org/10.1038/s42005-020-00403-4.
Mock, Tom. 2022a. “Get Started with Quarto - Getting Started with Quarto.” https://jthomasmock.github.io/quarto-2hr-webinar/.
———. 2022b. “Get Started with Quarto - Rstudio::conf 2022 Workshop.” https://rstudio-conf-2022.github.io/get-started-quarto/.
Quarto. n.d. “Quarto - Guide.” Quarto. https://quarto.org/docs/guide/. Accessed November 21, 2023.
Van Lissa, Caspar J., Andreas M. Brandmaier, Loek Brinkman, Anna-Lena Lamprecht, Aaron Peikert, Marijn E. Struiksma, and Barbara M. I. Vreede. 2021.
“WORCS: A Workflow for Open Reproducible Code in Science.” Data Science 4 (1): 29–49.
https://doi.org/10.3233/DS-210031.